Bacteria in cancer (BIC)
Analyses
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Bacterial abundance
Bacterial diversity
Bacterial composition
Clinical relevance
Bacterial co-abundance network
Bacteria-human gene network
Bacteria-associated biological function
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Bacterial composition
This module enables users to retrieve the bacterial compositions of each sample.
Select a cancer type:
Adrenocortical carcinoma (ACC)
Bladder Urothelial Carcinoma (BLCA)
Breast invasive carcinoma (BRCA)
Cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC)
Cholangiocarcinoma (CHOL)
Colon adenocarcinoma (COAD)
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (DLBC)
Esophageal carcinoma (ESCA)
Glioblastoma multiforme (GBM)
Head and Neck squamous cell carcinoma (HNSC)
Kidney Chromophobe (KICH)
Kidney renal clear cell carcinoma (KIRC)
Kidney renal papillary cell carcinoma (KIRP)
Brain Lower Grade Glioma (LGG)
Liver hepatocellular carcinoma (LIHC)
Lung adenocarcinoma (LUAD)
Lung squamous cell carcinoma (LUSC)
Mesothelioma (MESO)
Ovarian serous cystadenocarcinoma (OV)
Pancreatic adenocarcinoma (PAAD)
Pheochromocytoma and Paraganglioma (PCPG)
Prostate adenocarcinoma (PRAD)
Rectum adenocarcinoma (READ)
Sarcoma (SARC)
Skin Cutaneous Melanoma (SKCM)
Stomach adenocarcinoma (STAD)
Testicular Germ Cell Tumors (TGCT)
Thyroid carcinoma (THCA)
Thymoma (THYM)
Uterine Corpus Endometrial Carcinoma (UCEC)
Uterine Carcinosarcoma (UCS)
Uveal Melanoma (UVM)
Select a taxonomy level:
Phylum
Class
Order
Family
Genus
Show top N expressed bacterial taxa:
5
10
15
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Processing
Stacked barplot of the bacteria composition of samples detected in the selected cancer.
Table of the bacteria composition of samples detected in the selected cancer.
Cancer type
Taxonomy level
Bacteria
Aliquot barcode mirna seq
Relative abundance