analyses-bacteria-human-rna-network

Bacteria-human gene network

This module enables users to obtain mRNAs which expression values are significantly correlated with the abundance of a query bacteria in the specific tumor type. The correlation between mRNA expression and bacterial abundance is measured by Spearman correlation coefficient (SCC) with Fisher’s z-transformation.

Select a cancer type:

Select a taxonomy level:

Bacteria:

Z-score cutoff:

Number of the top N positive and negative correlated edges shown in the network:

Processing

Association network between bacteria and mRNA.

Associated mRNAs of the query bacteria.

Cancer type	Taxonomy level	Bacteria	human RNA	SCC z-score	SCC cor	SCC p-value